annotate python/tests/utils.txt @ 516:bce1fe45d1b2

corrected bugs detected by tests (because of moving functions around modules
author Nicolas Saunier <nicolas.saunier@polymtl.ca>
date Fri, 06 Jun 2014 14:14:01 -0400
parents abe0b2347d4c
children 9990ef119bce
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
31
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
1 >>> from utils import *
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
2 >>> from moving import Point
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
3
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
4 >>> computeChi2([],[])
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
5 0.0
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
6 >>> computeChi2(range(1,10),range(1,10))
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
7 0.0
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
8 >>> computeChi2(range(1,9),range(1,10))
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
9 0.0
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
10
32
48e56179c39e added ceil function
Nicolas Saunier <nico@confins.net>
parents: 31
diff changeset
11 >>> ceilDecimals(1.23, 0)
48e56179c39e added ceil function
Nicolas Saunier <nico@confins.net>
parents: 31
diff changeset
12 2.0
48e56179c39e added ceil function
Nicolas Saunier <nico@confins.net>
parents: 31
diff changeset
13 >>> ceilDecimals(1.23, 1)
48e56179c39e added ceil function
Nicolas Saunier <nico@confins.net>
parents: 31
diff changeset
14 1.3
48e56179c39e added ceil function
Nicolas Saunier <nico@confins.net>
parents: 31
diff changeset
15
152
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
16 >>> inBetween(1,2,1.5)
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
17 True
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
18 >>> inBetween(2.1,1,1.5)
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
19 True
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
20 >>> inBetween(1,2,0)
74b1fc68d4df re-organized code to avoid cyclic python module dependencies
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 42
diff changeset
21 False
31
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
22
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
23 >>> removeExtension('test-adfasdf.asdfa.txt')
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
24 'test-adfasdf.asdfa'
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
25 >>> removeExtension('test-adfasdf')
c000f37c316d moved tests to independent file, added chi2 computation
Nicolas Saunier <nico@confins.net>
parents:
diff changeset
26 'test-adfasdf'
42
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
27
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
28 >>> values = line2Ints('1 2 3 5 6')
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
29 >>> values[0]
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
30 1
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
31 >>> values[-1]
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
32 6
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
33 >>> values = line2Floats('1.3 2.45 7.158e+01 5 6')
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
34 >>> values[0]
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
35 1.3
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
36 >>> values[2] #doctest: +ELLIPSIS
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
37 71.5...
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
38 >>> values[-1]
1a2ac2d4f53a added loading of the rest of the data for objects
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 32
diff changeset
39 6.0
285
5957aa1d69e1 Integrating Mohamed's changes
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 152
diff changeset
40
297
f6f423e25c7f adding function to generate step plots (for cumulative number of vehicles)
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 285
diff changeset
41 >>> stepPlot([3, 5, 7, 8], 1, 10, 0)
f6f423e25c7f adding function to generate step plots (for cumulative number of vehicles)
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 285
diff changeset
42 ([1, 3, 3, 5, 5, 7, 7, 8, 8, 10], [0, 0, 1, 1, 2, 2, 3, 3, 4, 4])
f6f423e25c7f adding function to generate step plots (for cumulative number of vehicles)
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 285
diff changeset
43
455
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
44 >>> mostCommon(['a','b','c','b'])
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
45 'b'
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
46 >>> mostCommon(['a','b','c','b', 'c'])
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
47 'b'
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
48 >>> mostCommon(range(10)+[1])
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
49 1
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
50 >>> mostCommon([range(2), range(4), range(2)])
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
51 [0, 1]
abe0b2347d4c added most common utility function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 374
diff changeset
52
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
53 >>> lcss = LCSS(lambda x,y: abs(x-y) <= 0.1)
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
54 >>> lcss.compute(range(5), range(5))
285
5957aa1d69e1 Integrating Mohamed's changes
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 152
diff changeset
55 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
56 >>> lcss.compute(range(1,5), range(5))
285
5957aa1d69e1 Integrating Mohamed's changes
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 152
diff changeset
57 4
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
58 >>> lcss.compute(range(5,10), range(5))
285
5957aa1d69e1 Integrating Mohamed's changes
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 152
diff changeset
59 0
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
60 >>> lcss.compute(range(5), range(10))
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
61 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
62 >>> lcss.compute(range(5), range(10), 2)
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
63 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
64 >>> lcss.similarityFunc = lambda x,y: x == y
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
65 >>> lcss.compute(['a','b','c'], ['a','b','c', 'd'])
366
90bdabc06e9f updated LCSS to be more generic with a single similarity function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 323
diff changeset
66 3
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
67 >>> lcss.computeNormalized(['a','b','c'], ['a','b','c', 'd']) #doctest: +ELLIPSIS
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
68 1.0
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
69 >>> lcss.computeNormalized(['a','b','c','x'], ['a','b','c', 'd']) #doctest: +ELLIPSIS
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
70 0.75
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
71 >>> lcss.compute(['a','b','c'], ['a','b','c', 'd'])
366
90bdabc06e9f updated LCSS to be more generic with a single similarity function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 323
diff changeset
72 3
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
73 >>> lcss.compute(['a','x','b','c'], ['a','b','c','d','x'])
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
74 3
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
75 >>> lcss.compute(['a','b','c','x','d'], ['a','b','c','d','x'])
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
76 4
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
77 >>> lcss.delta = 1
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
78 >>> lcss.compute(['a','b','c'], ['a','b','x','x','c'])
368
2db4e76599a1 implemented subsequence extraction and rearranged arguments
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 366
diff changeset
79 2
2db4e76599a1 implemented subsequence extraction and rearranged arguments
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 366
diff changeset
80
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
81 >>> lcss.delta = float('inf')
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
82 >>> lcss.compute(['a','b','c'], ['a','b','c', 'd'], computeSubSequence = True)
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
83 3
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
84 >>> lcss.subSequenceIndices
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
85 [(0, 0), (1, 1), (2, 2)]
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
86 >>> lcss.compute(['a','b','c'], ['x','a','b','c'], computeSubSequence = True)
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
87 3
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
88 >>> lcss.subSequenceIndices
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
89 [(0, 1), (1, 2), (2, 3)]
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
90 >>> lcss.compute(['a','g','b','c'], ['a','b','c', 'd'], computeSubSequence = True)
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
91 3
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
92 >>> lcss.subSequenceIndices
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
93 [(0, 0), (2, 1), (3, 2)]
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
94
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
95 >>> alignedLcss = LCSS(lambda x,y:(abs(x-y) <= 0.1), delta = 2, aligned = True)
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
96 >>> alignedLcss.compute(range(5), range(5))
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
97 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
98 >>> alignedLcss.compute(range(1,5), range(5))
366
90bdabc06e9f updated LCSS to be more generic with a single similarity function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 323
diff changeset
99 4
90bdabc06e9f updated LCSS to be more generic with a single similarity function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 323
diff changeset
100
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
101 >>> alignedLcss.compute(range(5,10), range(10))
366
90bdabc06e9f updated LCSS to be more generic with a single similarity function
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 323
diff changeset
102 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
103
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
104 >>> lcss.delta = 2
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
105 >>> lcss.compute(range(5,10), range(10))
322
28661c5887d3 Corrected a major bug for LCSS
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 297
diff changeset
106 0
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
107 >>> alignedLcss.delta = 6
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
108 >>> alignedLcss.compute(range(5), range(5))
323
efd4dd4665ac corrected issues with large deltas
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 322
diff changeset
109 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
110 >>> alignedLcss.compute(range(5), range(6))
323
efd4dd4665ac corrected issues with large deltas
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 322
diff changeset
111 5
369
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
112 >>> lcss.delta = 10
027e254f0b53 lcss subclass for indicators
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 368
diff changeset
113 >>> alignedLcss.compute(range(1,7), range(6))
323
efd4dd4665ac corrected issues with large deltas
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 322
diff changeset
114 5
374
a7af3519687e finished implementation of aligned LCSS with matching sequence decoded
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 369
diff changeset
115 >>> lcss = LCSS(lambda x,y: x == y, delta = 2, aligned = True)
a7af3519687e finished implementation of aligned LCSS with matching sequence decoded
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 369
diff changeset
116 >>> lcss.compute(range(20), [2,4,6,7,8,9,11,13], True)
a7af3519687e finished implementation of aligned LCSS with matching sequence decoded
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 369
diff changeset
117 8
a7af3519687e finished implementation of aligned LCSS with matching sequence decoded
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 369
diff changeset
118 >>> lcss.subSequenceIndices
a7af3519687e finished implementation of aligned LCSS with matching sequence decoded
Nicolas Saunier <nicolas.saunier@polymtl.ca>
parents: 369
diff changeset
119 [(2, 0), (4, 1), (6, 2), (7, 3), (8, 4), (9, 5), (11, 6), (13, 7)]